Techniques used to achieve our goals
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Single nucleus ATAC-seq will be used to discover epigenetic mechanisms and transcriptional drivers that underly heterogeneity defined in the other methods.
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Single nucleus RNA- seq will identify rare cell populations and permit rigorous analysis of differential expression within all tumor and microenvironmental cell populations.
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Spatial transcriptomics will be employed as a discovery tool to nominate novel targets and to identify heterogeneity in cell transcriptional phenotypes.
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Imaging Mass Cytometry will be essential for directly assaying targeted protein expression and for accurately identifying the spatial position of major cell types.
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A non-invasive, blood-based biopsy for cancer that can provide doctors with information related to a patient’s disease and response to treatment. Liquid biopsies will be used to monitor circulating tumor cells and their molecular profiles.